HL_4U52_124

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAUGGCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U52_124 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.326

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4U52|1|5|C|439
4U52|1|5|A|440
4U52|1|5|U|441
4U52|1|5|G|442
4U52|1|5|G|443
4U52|1|5|C|491
4U52|1|5|U|492
4U52|1|5|G|493

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l6

60S ribosomal protein L6-A

Chain o2

60S ribosomal protein L32