HL_4U52_198

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACAGGGCCCAUUCGGGUCUUGU

Length

22 nucleotides

Bulged bases

4U52|1|6|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U52_198 not in the Motif Atlas

Homologous match to HL_8P9A_202

Geometric discrepancy: 0.2352

The information below is about HL_8P9A_202

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U52|1|6|A|483
4U52|1|6|C|484
4U52|1|6|A|485
4U52|1|6|G|486
4U52|1|6|G|487
4U52|1|6|G|488
4U52|1|6|C|489
4U52|1|6|C|490
4U52|1|6|C|491
4U52|1|6|A|492
4U52|1|6|U|493
4U52|1|6|U|494
4U52|1|6|C|495
4U52|1|6|G|496
4U52|1|6|G|497
4U52|1|6|G|498
4U52|1|6|U|499
4U52|1|6|C|500
4U52|1|6|U|501
4U52|1|6|U|502
4U52|1|6|G|503
4U52|1|6|U|504

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A