HL_4U52_237
3D structure
- PDB id
- 4U52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Nagilactone C bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GGCCUGAUUUUAUGCAGGCC
- Length
- 20 nucleotides
- Bulged bases
- 4U52|1|5|U|1569, 4U52|1|5|U|1570
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4U52|1|5|G|1560
4U52|1|5|G|1561
4U52|1|5|C|1562
4U52|1|5|C|1563
4U52|1|5|U|1564
4U52|1|5|G|1565
4U52|1|5|A|1566
4U52|1|5|U|1567
4U52|1|5|U|1568
4U52|1|5|U|1569
4U52|1|5|U|1570
4U52|1|5|A|1571
4U52|1|5|U|1572
4U52|1|5|G|1573
4U52|1|5|C|1574
4U52|1|5|A|1575
4U52|1|5|G|1576
4U52|1|5|G|1577
4U52|1|5|C|1578
4U52|1|5|C|1579
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain l2
- 60S ribosomal protein L2-A
- Chain l8
- 60S ribosomal protein L8-A
- Chain n5
- 60S ribosomal protein L25
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