HL_4U52_248

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

4U52|1|6|G|1243, 4U52|1|6|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U52_248 not in the Motif Atlas

Homologous match to HL_8P9A_216

Geometric discrepancy: 0.1758

The information below is about HL_8P9A_216

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

12

Unit IDs

4U52|1|6|A|1238
4U52|1|6|U|1239
4U52|1|6|U|1240
4U52|1|6|G|1241
4U52|1|6|A|1242
4U52|1|6|G|1243
4U52|1|6|A|1244
4U52|1|6|G|1245
4U52|1|6|C|1246
4U52|1|6|U|1247

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c5

40S ribosomal protein S15

Chain d9

40S ribosomal protein S29-A

Chain e1

Ubiquitin-40S ribosomal protein S31