HL_4U53_028

3D structure

PDB id

4U53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGUAACAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U53_028 not in the Motif Atlas

Geometric match to HL_5TBW_028

Geometric discrepancy: 0.0917

The information below is about HL_5TBW_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

4U53|1|1|G|1266
4U53|1|1|U|1267
4U53|1|1|G|1268
4U53|1|1|U|1269
4U53|1|1|A|1270
4U53|1|1|A|1271
4U53|1|1|C|1272
4U53|1|1|A|1273
4U53|1|1|A|1274
4U53|1|1|C|1275

Current chains

Chain 1

25S ribosomal RNA

Nearby chains