HL_4U53_088

3D structure

PDB id

4U53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

4U53|1|2|U|718, 4U53|1|2|U|719, 4U53|1|2|U|721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U53|1|2|G|703
4U53|1|2|C|704
4U53|1|2|U|705
4U53|1|2|A|706
4U53|1|2|A|707
4U53|1|2|C|708
4U53|1|2|C|709
4U53|1|2|U|710
4U53|1|2|U|711
4U53|1|2|G|712
4U53|1|2|A|713
4U53|1|2|G|714
4U53|1|2|U|715
4U53|1|2|C|716
4U53|1|2|C|717
4U53|1|2|U|718
4U53|1|2|U|719
4U53|1|2|G|720
4U53|1|2|U|721
4U53|1|2|G|722
4U53|1|2|G|723
4U53|1|2|C|724
4U53|1|2|U|725
4U53|1|2|C|726
4U53|1|2|U|727
4U53|1|2|U|728
4U53|1|2|G|729
4U53|1|2|G|730
4U53|1|2|C|731
4U53|1|2|G|732
4U53|1|2|A|733
4U53|1|2|A|734
4U53|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A