HL_4U53_109

3D structure

PDB id

4U53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U53_109 not in the Motif Atlas

Geometric match to HL_5TBW_185

Geometric discrepancy: 0.1054

The information below is about HL_5TBW_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83767.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

4U53|1|3|C|36
4U53|1|3|G|37
4U53|1|3|U|38
4U53|1|3|C|39
4U53|1|3|C|40
4U53|1|3|G|41

Current chains

Chain 3

5S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain L5

60S ribosomal protein L5

Chain M1

60S ribosomal protein L11-B

Chain SM

Suppressor protein STM1