HL_4U53_141
3D structure
- PDB id
- 4U53 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CCAUGGAAGUCGG
- Length
- 13 nucleotides
- Bulged bases
- 4U53|1|5|A|1245
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4U53_141 not in the Motif Atlas
- Geometric match to HL_6JXM_001
- Geometric discrepancy: 0.2922
- The information below is about HL_6JXM_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
4U53|1|5|C|1238
4U53|1|5|C|1239
4U53|1|5|A|1240
4U53|1|5|U|1241
4U53|1|5|G|1242
4U53|1|5|G|1243
4U53|1|5|A|1244
4U53|1|5|A|1245
4U53|1|5|G|1246
4U53|1|5|U|1247
4U53|1|5|C|1248
4U53|1|5|G|1249
4U53|1|5|G|1250
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain m2
- Unknown Protein m2
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