3D structure

PDB id
4U53 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CAGGGCCCAUUCGGGUCUUG
Length
20 nucleotides
Bulged bases
4U53|1|6|U|493, 4U53|1|6|U|494, 4U53|1|6|C|495
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4U53|1|6|C|484
4U53|1|6|A|485
4U53|1|6|G|486
4U53|1|6|G|487
4U53|1|6|G|488
4U53|1|6|C|489
4U53|1|6|C|490
4U53|1|6|C|491
4U53|1|6|A|492
4U53|1|6|U|493
4U53|1|6|U|494
4U53|1|6|C|495
4U53|1|6|G|496
4U53|1|6|G|497
4U53|1|6|G|498
4U53|1|6|U|499
4U53|1|6|C|500
4U53|1|6|U|501
4U53|1|6|U|502
4U53|1|6|G|503

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

Chain e0
40S ribosomal protein S30-A
Chain s9
40S ribosomal protein S9-A

Coloring options:

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