HL_4U53_218

3D structure

PDB id

4U53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

4U53|1|6|C|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U53_218 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.1737

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

4U53|1|6|U|1396
4U53|1|6|U|1397
4U53|1|6|U|1398
4U53|1|6|C|1399
4U53|1|6|A|1400
4U53|1|6|A|1401
4U53|1|6|G|1402

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c7

40S ribosomal protein S17-A

Chain d8

40S ribosomal protein S28-A