HL_4U55_232

3D structure

PDB id

4U55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cryptopleurine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGCUAACCUUGAGUCCUUGUGGCUCUUGGCGAACC

Length

35 nucleotides

Bulged bases

4U55|1|2|U|705, 4U55|1|2|U|719, 4U55|1|2|U|721, 4U55|1|2|G|729, 4U55|1|2|G|732, 4U55|1|2|A|733

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U55|1|2|G|702
4U55|1|2|G|703
4U55|1|2|C|704
4U55|1|2|U|705
4U55|1|2|A|706
4U55|1|2|A|707
4U55|1|2|C|708
4U55|1|2|C|709
4U55|1|2|U|710
4U55|1|2|U|711
4U55|1|2|G|712
4U55|1|2|A|713
4U55|1|2|G|714
4U55|1|2|U|715
4U55|1|2|C|716
4U55|1|2|C|717
4U55|1|2|U|718
4U55|1|2|U|719
4U55|1|2|G|720
4U55|1|2|U|721
4U55|1|2|G|722
4U55|1|2|G|723
4U55|1|2|C|724
4U55|1|2|U|725
4U55|1|2|C|726
4U55|1|2|U|727
4U55|1|2|U|728
4U55|1|2|G|729
4U55|1|2|G|730
4U55|1|2|C|731
4U55|1|2|G|732
4U55|1|2|A|733
4U55|1|2|A|734
4U55|1|2|C|735
4U55|1|2|C|736

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A