HL_4U55_241

3D structure

PDB id

4U55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cryptopleurine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAUUUUGUUGGUUUCUAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U55_241 not in the Motif Atlas

Homologous match to HL_8P9A_208

Geometric discrepancy: 0.1362

The information below is about HL_8P9A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U55|1|6|C|827
4U55|1|6|U|828
4U55|1|6|A|829
4U55|1|6|U|830
4U55|1|6|U|831
4U55|1|6|U|832
4U55|1|6|U|833
4U55|1|6|G|834
4U55|1|6|U|835
4U55|1|6|U|836
4U55|1|6|G|837
4U55|1|6|G|838
4U55|1|6|U|839
4U55|1|6|U|840
4U55|1|6|U|841
4U55|1|6|C|842
4U55|1|6|U|843
4U55|1|6|A|844
4U55|1|6|G|845

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A