HL_4U56_089

3D structure

PDB id

4U56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Blasticidin S bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

4U56|1|2|U|719, 4U56|1|2|U|721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U56|1|2|G|703
4U56|1|2|C|704
4U56|1|2|U|705
4U56|1|2|A|706
4U56|1|2|A|707
4U56|1|2|C|708
4U56|1|2|C|709
4U56|1|2|U|710
4U56|1|2|U|711
4U56|1|2|G|712
4U56|1|2|A|713
4U56|1|2|G|714
4U56|1|2|U|715
4U56|1|2|C|716
4U56|1|2|C|717
4U56|1|2|U|718
4U56|1|2|U|719
4U56|1|2|G|720
4U56|1|2|U|721
4U56|1|2|G|722
4U56|1|2|G|723
4U56|1|2|C|724
4U56|1|2|U|725
4U56|1|2|C|726
4U56|1|2|U|727
4U56|1|2|U|728
4U56|1|2|G|729
4U56|1|2|G|730
4U56|1|2|C|731
4U56|1|2|G|732
4U56|1|2|A|733
4U56|1|2|A|734
4U56|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A