HL_4U56_194

3D structure

PDB id

4U56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Blasticidin S bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

4U56|1|6|U|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U56_194 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.2674

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4U56|1|6|C|275
4U56|1|6|C|276
4U56|1|6|U|277
4U56|1|6|U|278
4U56|1|6|G|279
4U56|1|6|U|280
4U56|1|6|G|281

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain n4

60S ribosomal protein L24-A

Chain s6

40S ribosomal protein S6-A