HL_4U56_241

3D structure

PDB id

4U56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Blasticidin S bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CAGGGCCCAUUCGGGUCUUG

Length

20 nucleotides

Bulged bases

4U56|1|6|C|489, 4U56|1|6|U|493, 4U56|1|6|U|494, 4U56|1|6|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U56|1|6|C|484
4U56|1|6|A|485
4U56|1|6|G|486
4U56|1|6|G|487
4U56|1|6|G|488
4U56|1|6|C|489
4U56|1|6|C|490
4U56|1|6|C|491
4U56|1|6|A|492
4U56|1|6|U|493
4U56|1|6|U|494
4U56|1|6|C|495
4U56|1|6|G|496
4U56|1|6|G|497
4U56|1|6|G|498
4U56|1|6|U|499
4U56|1|6|C|500
4U56|1|6|U|501
4U56|1|6|U|502
4U56|1|6|G|503

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A