HL_4U56_242

3D structure

PDB id

4U56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Blasticidin S bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UCCUUGUGG

Length

9 nucleotides

Bulged bases

4U56|1|6|C|717, 4U56|1|6|U|718, 4U56|1|6|U|719, 4U56|1|6|U|721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U56_242 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2686

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

4U56|1|6|U|715
4U56|1|6|C|716
4U56|1|6|C|717
4U56|1|6|U|718
4U56|1|6|U|719
4U56|1|6|G|720
4U56|1|6|U|721
4U56|1|6|G|722
4U56|1|6|G|723

Current chains

Chain 6

18S ribosomal RNA

Nearby chains