HL_4U67_011

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GGUGAGAGUCC

Length

11 nucleotides

Bulged bases

4U67|1|X|G|340, 4U67|1|X|A|341, 4U67|1|X|G|342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U67_011 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1673

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4U67|1|X|G|337
4U67|1|X|G|338
4U67|1|X|U|339
4U67|1|X|G|340
4U67|1|X|A|341
4U67|1|X|G|342
4U67|1|X|A|343
4U67|1|X|G|344
4U67|1|X|U|345
4U67|1|X|C|346
4U67|1|X|C|347

Current chains

Chain X

23s RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24