HL_4U67_012

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GUUCGUGAAAC

Length

11 nucleotides

Bulged bases

4U67|1|X|G|399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U67_012 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.1121

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4U67|1|X|G|395
4U67|1|X|U|396
4U67|1|X|U|397
4U67|1|X|C|398
4U67|1|X|G|399
4U67|1|X|U|400
4U67|1|X|G|401
4U67|1|X|A|402
4U67|1|X|A|403
4U67|1|X|A|404
4U67|1|X|C|405

Current chains

Chain X

23s RNA

Nearby chains

Chain U

50S ribosomal protein L28