HL_4U67_014

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U67_014 not in the Motif Atlas

Homologous match to HL_7RQB_015

Geometric discrepancy: 0.0766

The information below is about HL_7RQB_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4U67|1|X|C|473
4U67|1|X|G|474
4U67|1|X|U|475
4U67|1|X|G|476
4U67|1|X|A|477
4U67|1|X|G|478

Current chains

Chain X

23s RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L4

Chain P

50S ribosomal protein L22