HL_4U67_022

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

UGCUGAAACA

Length

10 nucleotides

Bulged bases

4U67|1|X|U|760, 4U67|1|X|A|764, 4U67|1|X|C|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U67_022 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.1292

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

12

Unit IDs

4U67|1|X|U|757
4U67|1|X|G|758
4U67|1|X|C|759
4U67|1|X|U|760
4U67|1|X|G|761
4U67|1|X|A|762
4U67|1|X|A|763
4U67|1|X|A|764
4U67|1|X|C|765
4U67|1|X|A|766

Current chains

Chain X

23s RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain B

50S ribosomal protein L3

Chain P

50S ribosomal protein L22