HL_4U67_025

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GCUAAAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U67_025 not in the Motif Atlas

Geometric match to HL_5AMQ_001

Geometric discrepancy: 0.3045

The information below is about HL_5AMQ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

4U67|1|X|G|888
4U67|1|X|C|889
4U67|1|X|U|890
4U67|1|X|A|891
4U67|1|X|A|911
4U67|1|X|A|912
4U67|1|X|A|913
4U67|1|X|C|914

Current chains

Chain X

23s RNA

Nearby chains

Chain S

50S ribosomal protein L25