HL_4U67_026

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

AGCUAACU

Length

8 nucleotides

Bulged bases

4U67|1|X|U|969, 4U67|1|X|C|972

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U67_026 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.0995

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

4U67|1|X|A|966
4U67|1|X|G|967
4U67|1|X|C|968
4U67|1|X|U|969
4U67|1|X|A|970
4U67|1|X|A|971
4U67|1|X|C|972
4U67|1|X|U|973

Current chains

Chain X

23s RNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain Y

5S ribosomal RNA; 5S rRNA