HL_4U67_028

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

4U67|1|X|A|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U67_028 not in the Motif Atlas

Geometric match to HL_5J7L_161

Geometric discrepancy: 0.2573

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4U67|1|X|C|1075
4U67|1|X|U|1076
4U67|1|X|U|1077
4U67|1|X|A|1078
4U67|1|X|G|1079
4U67|1|X|A|1080
4U67|1|X|A|1081
4U67|1|X|G|1082
4U67|1|X|C|1083
4U67|1|X|A|1084
4U67|1|X|G|1085

Current chains

Chain X

23s RNA

Nearby chains

Chain J

50S ribosomal protein L16