HL_4U67_040

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4U67|1|X|A|1632, 4U67|1|X|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U67_040 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0957

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4U67|1|X|C|1628
4U67|1|X|G|1629
4U67|1|X|A|1630
4U67|1|X|C|1631
4U67|1|X|A|1632
4U67|1|X|C|1633
4U67|1|X|A|1634
4U67|1|X|G|1635

Current chains

Chain X

23s RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain P

50S ribosomal protein L22