HL_4U67_052

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4U67|1|X|G|2229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U67_052 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1016

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

4U67|1|X|C|2227
4U67|1|X|U|2228
4U67|1|X|G|2229
4U67|1|X|G|2230
4U67|1|X|G|2231
4U67|1|X|G|2232
4U67|1|X|C|2233
4U67|1|X|G|2234
4U67|1|X|G|2235

Current chains

Chain X

23s RNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain T

50S ribosomal protein L27