HL_4U6F_198

3D structure

PDB id

4U6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T-2 toxin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACAGGGCCCAUUCGGGUCUUGU

Length

22 nucleotides

Bulged bases

4U6F|1|6|U|493, 4U6F|1|6|U|494, 4U6F|1|6|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U6F_198 not in the Motif Atlas

Homologous match to HL_8P9A_202

Geometric discrepancy: 0.224

The information below is about HL_8P9A_202

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U6F|1|6|A|483
4U6F|1|6|C|484
4U6F|1|6|A|485
4U6F|1|6|G|486
4U6F|1|6|G|487
4U6F|1|6|G|488
4U6F|1|6|C|489
4U6F|1|6|C|490
4U6F|1|6|C|491
4U6F|1|6|A|492
4U6F|1|6|U|493
4U6F|1|6|U|494
4U6F|1|6|C|495
4U6F|1|6|G|496
4U6F|1|6|G|497
4U6F|1|6|G|498
4U6F|1|6|U|499
4U6F|1|6|C|500
4U6F|1|6|U|501
4U6F|1|6|U|502
4U6F|1|6|G|503
4U6F|1|6|U|504

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A