HL_4U6F_205

3D structure

PDB id

4U6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T-2 toxin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAUUUUGUUGGUUUCUA

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U6F_205 not in the Motif Atlas

Geometric match to HL_3SUX_001

Geometric discrepancy: 0.3449

The information below is about HL_3SUX_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55436.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4U6F|1|6|U|828
4U6F|1|6|A|829
4U6F|1|6|U|830
4U6F|1|6|U|831
4U6F|1|6|U|832
4U6F|1|6|U|833
4U6F|1|6|G|834
4U6F|1|6|U|835
4U6F|1|6|U|836
4U6F|1|6|G|837
4U6F|1|6|G|838
4U6F|1|6|U|839
4U6F|1|6|U|840
4U6F|1|6|U|841
4U6F|1|6|C|842
4U6F|1|6|U|843
4U6F|1|6|A|844

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A