HL_4UPY_011

3D structure

PDB id

4UPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UGAUAG

Length

6 nucleotides

Bulged bases

4UPY|1|C|U|297

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UPY_011 not in the Motif Atlas

Geometric match to HL_5FMZ_001

Geometric discrepancy: 0.3004

The information below is about HL_5FMZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_21043.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

9

Unit IDs

4UPY|1|C|U|294
4UPY|1|C|G|295
4UPY|1|C|A|296
4UPY|1|C|U|297
4UPY|1|C|A|298
4UPY|1|C|G|299

Current chains

Chain C

HCV-IRES

Nearby chains