HL_4V4G_056

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

4V4G|1|BB|A|794, 4V4G|1|BB|A|795, 4V4G|1|BB|A|797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_056 not in the Motif Atlas

Homologous match to HL_5J7L_156

Geometric discrepancy: 0.527

The information below is about HL_5J7L_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

4V4G|1|BB|U|792
4V4G|1|BB|G|793
4V4G|1|BB|A|794
4V4G|1|BB|A|795
4V4G|1|BB|A|796
4V4G|1|BB|A|797
4V4G|1|BB|G|798

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BD

50S ribosomal protein L2