3D structure

PDB id
4V4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.
Experimental method
X-RAY DIFFRACTION
Resolution
11.5 Å

Loop

Sequence
GUAACUAUAAC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V4G_078 not in the Motif Atlas
Geometric match to HL_5ID6_001
Geometric discrepancy: 0.2589
The information below is about HL_5ID6_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_69752.2
Basepair signature
cWW-F
Number of instances in this motif group
7

Unit IDs

4V4G|1|BB|G|1893
4V4G|1|BB|U|1894
4V4G|1|BB|A|1895
4V4G|1|BB|A|1896
4V4G|1|BB|C|1897
4V4G|1|BB|U|1898
4V4G|1|BB|A|1899
4V4G|1|BB|U|1900
4V4G|1|BB|A|1901
4V4G|1|BB|A|1902
4V4G|1|BB|C|1903

Current chains

Chain BB
23S RIBOSOMAL RNA

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain Aa
protein Y

Coloring options:


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