HL_4V4G_085

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CGCAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_085 not in the Motif Atlas

Homologous match to HL_9DFE_054

Geometric discrepancy: 0.3612

The information below is about HL_9DFE_054

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

27

Unit IDs

4V4G|1|BB|C|2303
4V4G|1|BB|G|2304
4V4G|1|BB|C|2305
4V4G|1|BB|A|2306
4V4G|1|BB|A|2307
4V4G|1|BB|A|2308
4V4G|1|BB|G|2309
4V4G|1|BB|G|2310

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BG

50S ribosomal protein L5

Chain BX

50S ribosomal protein L27