HL_4V4G_135

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GGGAAACC

Length

8 nucleotides

Bulged bases

4V4G|1|DB|A|123

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_135 not in the Motif Atlas

Homologous match to HL_4WF9_003

Geometric discrepancy: 0.4219

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V4G|1|DB|G|120
4V4G|1|DB|G|121
4V4G|1|DB|G|122
4V4G|1|DB|A|123
4V4G|1|DB|A|124
4V4G|1|DB|A|125
4V4G|1|DB|C|126
4V4G|1|DB|C|127

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain D4

50S ribosomal protein L34

Chain DU

50S ribosomal protein L23