HL_4V4G_155

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

UUGAGG

Length

6 nucleotides

Bulged bases

4V4G|1|DB|U|840, 4V4G|1|DB|G|843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_155 not in the Motif Atlas

Homologous match to HL_5J7L_157

Geometric discrepancy: 0.4562

The information below is about HL_5J7L_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

4V4G|1|DB|U|839
4V4G|1|DB|U|840
4V4G|1|DB|G|841
4V4G|1|DB|A|842
4V4G|1|DB|G|843
4V4G|1|DB|G|844

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain DM

50S ribosomal protein L15