HL_4V4G_161

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

AACUCGCGAAGCGAGUU

Length

17 nucleotides

Bulged bases

4V4G|1|DB|G|1186, 4V4G|1|DB|A|1187, 4V4G|1|DB|A|1188, 4V4G|1|DB|A|1192

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_161 not in the Motif Atlas

Homologous match to HL_4WF9_030

Geometric discrepancy: 0.5931

The information below is about HL_4WF9_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|DB|A|1179
4V4G|1|DB|A|1180
4V4G|1|DB|C|1181
4V4G|1|DB|U|1182
4V4G|1|DB|C|1183
4V4G|1|DB|G|1184
4V4G|1|DB|C|1185
4V4G|1|DB|G|1186
4V4G|1|DB|A|1187
4V4G|1|DB|A|1188
4V4G|1|DB|G|1189
4V4G|1|DB|C|1190
4V4G|1|DB|G|1191
4V4G|1|DB|A|1192
4V4G|1|DB|G|1193
4V4G|1|DB|U|1194
4V4G|1|DB|U|1195

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain DF

50S ribosomal protein L4

Chain DM

50S ribosomal protein L15

Chain DS

50S ribosomal protein L21