HL_4V4G_164

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

4V4G|1|DB|G|1338, 4V4G|1|DB|U|1342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_164 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.4545

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4V4G|1|DB|G|1337
4V4G|1|DB|G|1338
4V4G|1|DB|U|1339
4V4G|1|DB|C|1340
4V4G|1|DB|G|1341
4V4G|1|DB|U|1342
4V4G|1|DB|C|1343

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain DO

50S ribosomal protein L17

Chain DT

50S ribosomal protein L22