HL_4V4G_171

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V4G|1|DB|U|1710, 4V4G|1|DB|C|1711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_171 not in the Motif Atlas

Homologous match to HL_7A0S_042

Geometric discrepancy: 0.4148

The information below is about HL_7A0S_042

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4V4G|1|DB|C|1708
4V4G|1|DB|U|1709
4V4G|1|DB|U|1710
4V4G|1|DB|C|1711
4V4G|1|DB|G|1712
4V4G|1|DB|G|1713

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DD

50S ribosomal protein L2