HL_4V4G_217

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

4V4G|1|EA|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_217 not in the Motif Atlas

Homologous match to HL_6CZR_092

Geometric discrepancy: 0.4125

The information below is about HL_6CZR_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V4G|1|EA|G|963
4V4G|1|EA|A|964
4V4G|1|EA|A|965
4V4G|1|EA|G|966
4V4G|1|EA|C|967
4V4G|1|EA|A|968
4V4G|1|EA|A|969
4V4G|1|EA|C|970
4V4G|1|EA|G|971
4V4G|1|EA|C|972

Current chains

Chain EA

16S ribosomal RNA

Nearby chains

Chain EI

30S ribosomal protein S9

Chain EJ

30S ribosomal protein S10

Chain EM

30S ribosomal protein S13

Chain Ea

protein Y