HL_4V4G_236

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4V4G|1|FB|A|173, 4V4G|1|FB|A|176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_236 not in the Motif Atlas

Homologous match to HL_5J7L_139

Geometric discrepancy: 0.5348

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4V4G|1|FB|G|171
4V4G|1|FB|A|172
4V4G|1|FB|A|173
4V4G|1|FB|A|174
4V4G|1|FB|C|175
4V4G|1|FB|A|176
4V4G|1|FB|U|177
4V4G|1|FB|C|178

Current chains

Chain FB

23S RIBOSOMAL RNA

Nearby chains

Chain F1

50S ribosomal protein L31

Chain FM

50S ribosomal protein L15