HL_4V4G_297

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

4V4G|1|GA|C|188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_297 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.38

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

4V4G|1|GA|C|186
4V4G|1|GA|G|187
4V4G|1|GA|C|188
4V4G|1|GA|A|189
4V4G|1|GA|A|190
4V4G|1|GA|G|191

Current chains

Chain GA

16S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AT

30S ribosomal protein S20

Chain GT

30S ribosomal protein S20