3D structure

PDB id
4V4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.
Experimental method
X-RAY DIFFRACTION
Resolution
11.5 Å

Loop

Sequence
GGCAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V4G_321 not in the Motif Atlas
Homologous match to HL_6CZR_099
Geometric discrepancy: 0.5046
The information below is about HL_6CZR_099
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V4G|1|GA|G|1265
4V4G|1|GA|G|1266
4V4G|1|GA|C|1267
4V4G|1|GA|A|1268
4V4G|1|GA|A|1269
4V4G|1|GA|C|1270

Current chains

Chain GA
16S ribosomal RNA

Nearby chains

Chain CA
Small subunit ribosomal RNA; SSU rRNA
Chain GM
30S ribosomal protein S13

Coloring options:


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