HL_4V4G_329

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

ACGAGCUGGAGAUACGCUUUGACU

Length

24 nucleotides

Bulged bases

4V4G|1|HB|U|86, 4V4G|1|HB|G|87, 4V4G|1|HB|G|88, 4V4G|1|HB|A|89, 4V4G|1|HB|G|90, 4V4G|1|HB|A|91, 4V4G|1|HB|U|98, 4V4G|1|HB|U|99, 4V4G|1|HB|G|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|HB|A|80
4V4G|1|HB|C|81
4V4G|1|HB|G|82
4V4G|1|HB|A|83
4V4G|1|HB|G|84
4V4G|1|HB|C|85
4V4G|1|HB|U|86
4V4G|1|HB|G|87
4V4G|1|HB|G|88
4V4G|1|HB|A|89
4V4G|1|HB|G|90
4V4G|1|HB|A|91
4V4G|1|HB|U|92
4V4G|1|HB|A|93
4V4G|1|HB|C|94
4V4G|1|HB|G|95
4V4G|1|HB|C|96
4V4G|1|HB|U|97
4V4G|1|HB|U|98
4V4G|1|HB|U|99
4V4G|1|HB|G|100
4V4G|1|HB|A|101
4V4G|1|HB|C|102
4V4G|1|HB|U|103

Current chains

Chain HB

23S RIBOSOMAL RNA

Nearby chains

Chain HU

50S ribosomal protein L23

Chain HV

50S ribosomal protein L24

Chain HY

50S ribosomal protein L29