HL_4V4G_352

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

AGCUAACU

Length

8 nucleotides

Bulged bases

4V4G|1|HB|C|968, 4V4G|1|HB|U|969, 4V4G|1|HB|C|972

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_352 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.5406

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V4G|1|HB|A|966
4V4G|1|HB|G|967
4V4G|1|HB|C|968
4V4G|1|HB|U|969
4V4G|1|HB|A|970
4V4G|1|HB|A|971
4V4G|1|HB|C|972
4V4G|1|HB|U|973

Current chains

Chain HB

23S RIBOSOMAL RNA

Nearby chains

Chain HA

5S ribosomal RNA; 5S rRNA

Chain HN

50S ribosomal protein L16