HL_4V4G_357

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_357 not in the Motif Atlas

Homologous match to HL_4WF9_031

Geometric discrepancy: 0.2917

The information below is about HL_4WF9_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4V4G|1|HB|C|1235
4V4G|1|HB|G|1236
4V4G|1|HB|G|1237
4V4G|1|HB|A|1238
4V4G|1|HB|A|1239
4V4G|1|HB|G|1240

Current chains

Chain HB

23S RIBOSOMAL RNA

Nearby chains

Chain HM

50S ribosomal protein L15

Chain HR

50S ribosomal protein L20

Chain HS

50S ribosomal protein L21