HL_4V4G_364

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4V4G|1|HB|A|1630, 4V4G|1|HB|A|1632, 4V4G|1|HB|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_364 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.4559

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4V4G|1|HB|C|1628
4V4G|1|HB|G|1629
4V4G|1|HB|A|1630
4V4G|1|HB|C|1631
4V4G|1|HB|A|1632
4V4G|1|HB|C|1633
4V4G|1|HB|A|1634
4V4G|1|HB|G|1635

Current chains

Chain HB

23S RIBOSOMAL RNA

Nearby chains

Chain H4

50S ribosomal protein L34

Chain HT

50S ribosomal protein L22