3D structure

PDB id
4V4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.
Experimental method
X-RAY DIFFRACTION
Resolution
11.5 Å

Loop

Sequence
CGCAAAGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V4G_378 not in the Motif Atlas
Homologous match to HL_9DFE_054
Geometric discrepancy: 0.3613
The information below is about HL_9DFE_054
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_93324.4
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
24

Unit IDs

4V4G|1|HB|C|2303
4V4G|1|HB|G|2304
4V4G|1|HB|C|2305
4V4G|1|HB|A|2306
4V4G|1|HB|A|2307
4V4G|1|HB|A|2308
4V4G|1|HB|G|2309
4V4G|1|HB|G|2310

Current chains

Chain HB
23S RIBOSOMAL RNA

Nearby chains

Chain HG
50S ribosomal protein L5
Chain HX
50S ribosomal protein L27

Coloring options:


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