HL_4V4G_417

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

4V4G|1|IA|U|1136, 4V4G|1|IA|C|1137, 4V4G|1|IA|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_417 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.4216

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|IA|G|1134
4V4G|1|IA|U|1135
4V4G|1|IA|U|1136
4V4G|1|IA|C|1137
4V4G|1|IA|G|1138
4V4G|1|IA|G|1139
4V4G|1|IA|C|1140

Current chains

Chain IA

16S ribosomal RNA

Nearby chains

Chain EA

Small subunit ribosomal RNA; SSU rRNA