HL_4V4G_440

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

AUGGCACCUUAUGCGUGUUAU

Length

21 nucleotides

Bulged bases

4V4G|1|JB|C|553, 4V4G|1|JB|U|554, 4V4G|1|JB|U|555, 4V4G|1|JB|A|556, 4V4G|1|JB|U|557, 4V4G|1|JB|G|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|JB|A|546
4V4G|1|JB|U|547
4V4G|1|JB|G|548
4V4G|1|JB|G|549
4V4G|1|JB|C|550
4V4G|1|JB|A|551
4V4G|1|JB|C|552
4V4G|1|JB|C|553
4V4G|1|JB|U|554
4V4G|1|JB|U|555
4V4G|1|JB|A|556
4V4G|1|JB|U|557
4V4G|1|JB|G|558
4V4G|1|JB|C|559
4V4G|1|JB|G|560
4V4G|1|JB|U|561
4V4G|1|JB|G|562
4V4G|1|JB|U|563
4V4G|1|JB|U|564
4V4G|1|JB|A|565
4V4G|1|JB|U|566

Current chains

Chain JB

23S RIBOSOMAL RNA

Nearby chains

Chain JK

50S ribosomal protein L13

Chain JR

50S ribosomal protein L20

Chain JS

50S ribosomal protein L21