HL_4V4G_451

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GGAAACAACC

Length

10 nucleotides

Bulged bases

4V4G|1|JB|A|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_451 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3778

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4V4G|1|JB|G|988
4V4G|1|JB|G|989
4V4G|1|JB|A|990
4V4G|1|JB|A|991
4V4G|1|JB|A|992
4V4G|1|JB|C|993
4V4G|1|JB|A|994
4V4G|1|JB|A|995
4V4G|1|JB|C|996
4V4G|1|JB|C|997

Current chains

Chain JB

23S RIBOSOMAL RNA

Nearby chains

Chain JA

5S ribosomal RNA; 5S rRNA

Chain JR

50S ribosomal protein L20

Chain JZ

50S ribosomal protein L30