HL_4V4G_458

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CGAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_458 not in the Motif Atlas

Homologous match to HL_9DFE_033

Geometric discrepancy: 0.1929

The information below is about HL_9DFE_033

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V4G|1|JB|C|1376
4V4G|1|JB|G|1377
4V4G|1|JB|A|1378
4V4G|1|JB|A|1379
4V4G|1|JB|C|1380
4V4G|1|JB|G|1381

Current chains

Chain JB

23S RIBOSOMAL RNA

Nearby chains

Chain J1

50S ribosomal protein L31