HL_4V4G_473

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4V4G|1|JB|U|2228, 4V4G|1|JB|G|2229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4G_473 not in the Motif Atlas

Geometric match to HL_4KR9_003

Geometric discrepancy: 0.3165

The information below is about HL_4KR9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70782.2

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V4G|1|JB|C|2227
4V4G|1|JB|U|2228
4V4G|1|JB|G|2229
4V4G|1|JB|G|2230
4V4G|1|JB|G|2231
4V4G|1|JB|G|2232
4V4G|1|JB|C|2233
4V4G|1|JB|G|2234
4V4G|1|JB|G|2235

Current chains

Chain JB

23S RIBOSOMAL RNA

Nearby chains

Chain JN

50S ribosomal protein L16

Chain JX

50S ribosomal protein L27